IL_5J7L_345

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5J7L|1|DA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5J7L|1|DA|C|2636
5J7L|1|DA|U|2637
5J7L|1|DA|G|2638
5J7L|1|DA|A|2639
5J7L|1|DA|G|2640
*
5J7L|1|DA|C|2774
5J7L|1|DA|G|2775
5J7L|1|DA|A|2776
5J7L|1|DA|G|2777
5J7L|1|DA|A|2778
5J7L|1|DA|U|2779
5J7L|1|DA|G|2780
5J7L|1|DA|A|2781
5J7L|1|DA|G|2782

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L13