Motif IL_04638.3 Version IL_04638.3 of this group appears in releases 3.91 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-10 | 4-6 | 5-11 | 8-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_099 | 4WF9 | 0.0984 | 1 | tSH-tHS-tHW | X | LSU rRNA | C | 2801 | A | 2802 | A | 2803 | G | 2804 | A | 2805 | U | 2806 | A | 2808 | G | 2809 | * | U | 2663 | U | 2664 | G | 2665 | A | 2666 | G | 2667 | cWW | tSH | tHW | ncSH | tHS | cWW |
| 2 | IL_7A0S_093 | 7A0S | 0.0890 | 1 | tSH-tHS-tHW | X | LSU rRNA | C | 2754 | A | 2755 | A | 2756 | G | 2757 | A | 2758 | U | 2759 | A | 2761 | G | 2762 | * | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | cWW | tSH | tHW | ncSH | tHS | cWW |
| 3 | IL_9DFE_101 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | C | 2774 | A | 2775 | A | 2776 | G | 2777 | A | 2778 | U | 2779 | A | 2781 | G | 2782 | * | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | cWW | tSH | tHW | ncSH | tHS | cWW | |
| 4 | IL_5J7L_345 | 5J7L | 0.1124 | 1 | tSH-tHS-tHW | DA | LSU rRNA | C | 2774 | G | 2775 | A | 2776 | G | 2777 | A | 2778 | U | 2779 | A | 2781 | G | 2782 | * | C | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | cWW | tSH | tHW | cSH | tHS | cWW |
| 5 | IL_4V9F_091 | 4V9F | 0.3606 | 1 | 0 | LSU rRNA | G | 2809 | G | 2810 | A | 2811 | A | 2812 | A | 2813 | A | 2814 | A | 2816 | G | 2817 | * | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | cWW | tSH | tHW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGAUGAG*UUGAG | 3 |
| CGAGAUGAG*CUGAG | 1 |
| GGAAAAGAG*CUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGAUGA*UGA | 3 |
| GAGAUGA*UGA | 1 |
| GAAAAGA*UGA | 1 |
- Annotations
-
- tSH-tHS-tHW (3)
- (2)
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.17 | Max 0.38
Coloring options: