IL_5J7L_348

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

5J7L|1|DA|U|2689, 5J7L|1|DA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5J7L|1|DA|U|2687
5J7L|1|DA|G|2688
5J7L|1|DA|U|2689
5J7L|1|DA|U|2690
5J7L|1|DA|C|2691
*
5J7L|1|DA|G|2718
5J7L|1|DA|G|2719
5J7L|1|DA|U|2720
5J7L|1|DA|A|2721
5J7L|1|DA|G|2722

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DO

50S ribosomal protein L17

Chain DQ

50S ribosomal protein L19