IL_5J7L_373

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_373 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0641

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|G|1666
5J7L|1|CA|G|1667
5J7L|1|CA|A|1668
5J7L|1|CA|A|1669
5J7L|1|CA|C|1670
5J7L|1|CA|U|1671
5J7L|1|CA|A|1672
5J7L|1|CA|G|1673
5J7L|1|CA|G|1674
*
5J7L|1|CA|C|1990
5J7L|1|CA|U|1991
5J7L|1|CA|G|1992
5J7L|1|CA|U|1993
5J7L|1|CA|C|1994

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CL

50S ribosomal protein L14