IL_5J7L_374

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J7L_374 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0382

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J7L|1|CA|U|1851
5J7L|1|CA|U|1852
5J7L|1|CA|A|1853
5J7L|1|CA|A|1854
5J7L|1|CA|U|1855
5J7L|1|CA|U|1856
5J7L|1|CA|G|1857
5J7L|1|CA|A|1858
5J7L|1|CA|U|1859
5J7L|1|CA|G|1860
*
5J7L|1|CA|U|1882
5J7L|1|CA|U|1883
5J7L|1|CA|G|1884
5J7L|1|CA|A|1885
5J7L|1|CA|U|1886
5J7L|1|CA|C|1887
5J7L|1|CA|G|1888
5J7L|1|CA|A|1889
5J7L|1|CA|A|1890
5J7L|1|CA|G|1891

Current chains

Chain CA

23S rRNA

Nearby chains