IL_5J7L_397

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAG*CCUUUAAUG

Length

27 nucleotides

Bulged bases

5J7L|1|DA|U|2111, 5J7L|1|DA|A|2114, 5J7L|1|DA|G|2115, 5J7L|1|DA|G|2116, 5J7L|1|DA|A|2117, 5J7L|1|DA|U|2118, 5J7L|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54737.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

5J7L|1|DA|C|2103
5J7L|1|DA|C|2104
5J7L|1|DA|U|2105
5J7L|1|DA|U|2106
5J7L|1|DA|G|2107
5J7L|1|DA|A|2108
5J7L|1|DA|U|2109
5J7L|1|DA|G|2110
5J7L|1|DA|U|2111
5J7L|1|DA|G|2112
5J7L|1|DA|U|2113
5J7L|1|DA|A|2114
5J7L|1|DA|G|2115
5J7L|1|DA|G|2116
5J7L|1|DA|A|2117
5J7L|1|DA|U|2118
5J7L|1|DA|A|2119
5J7L|1|DA|G|2120
*
5J7L|1|DA|C|2178
5J7L|1|DA|C|2179
5J7L|1|DA|U|2180
5J7L|1|DA|U|2181
5J7L|1|DA|U|2182
5J7L|1|DA|A|2183
5J7L|1|DA|A|2184
5J7L|1|DA|U|2185
5J7L|1|DA|G|2186

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA