IL_5J88_084
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CAG*CAGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_084 not in the Motif Atlas
- Homologous match to IL_5J7L_021
- Geometric discrepancy: 0.0611
- The information below is about IL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_33323.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5J88|1|BA|C|440
5J88|1|BA|A|441
5J88|1|BA|G|442
*
5J88|1|BA|C|492
5J88|1|BA|A|493
5J88|1|BA|G|494
5J88|1|BA|A|495
5J88|1|BA|A|496
5J88|1|BA|G|497
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BD
- 30S ribosomal protein S4
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DH
- 50S ribosomal protein L9
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