IL_5J88_086
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_086 not in the Motif Atlas
- Homologous match to IL_5J7L_023
- Geometric discrepancy: 0.0996
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5J88|1|BA|G|450
5J88|1|BA|A|451
5J88|1|BA|A|452
5J88|1|BA|G|453
5J88|1|BA|G|454
5J88|1|BA|G|455
*
5J88|1|BA|C|477
5J88|1|BA|A|478
5J88|1|BA|U|479
5J88|1|BA|U|480
5J88|1|BA|G|481
5J88|1|BA|A|482
5J88|1|BA|C|483
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BP
- 30S ribosomal protein S16
- Chain DH
- 50S ribosomal protein L9
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