IL_5J88_103

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5J88|1|BA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_103 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5J88|1|BA|G|933
5J88|1|BA|C|934
5J88|1|BA|A|935
*
5J88|1|BA|U|1380
5J88|1|BA|U|1381
5J88|1|BA|C|1382
5J88|1|BA|C|1383
5J88|1|BA|C|1384

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9