IL_5J88_128
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_128 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.1251
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5J88|1|CA|G|24
5J88|1|CA|U|25
5J88|1|CA|G|26
5J88|1|CA|G|27
5J88|1|CA|A|28
5J88|1|CA|U|29
5J88|1|CA|G|30
*
5J88|1|CA|C|510
5J88|1|CA|U|511
5J88|1|CA|G|512
5J88|1|CA|A|513
5J88|1|CA|A|514
5J88|1|CA|A|515
5J88|1|CA|C|516
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein L32
- Chain CE
- 50S ribosomal protein L4
- Chain CR
- 50S ribosomal protein L20
- Chain CT
- 50S ribosomal protein L22
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