IL_5J88_134

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_134 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0923

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5J88|1|CA|C|239
5J88|1|CA|C|240
5J88|1|CA|A|241
5J88|1|CA|G|242
5J88|1|CA|U|243
5J88|1|CA|A|244
5J88|1|CA|G|245
*
5J88|1|CA|C|253
5J88|1|CA|G|254
5J88|1|CA|A|255
5J88|1|CA|A|256
5J88|1|CA|C|257
5J88|1|CA|G|258

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CM

50S ribosomal protein L15