IL_5J88_143

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5J88|1|CA|G|801, 5J88|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_143 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1115

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5J88|1|CA|G|674
5J88|1|CA|A|675
5J88|1|CA|A|676
5J88|1|CA|A|677
5J88|1|CA|C|678
*
5J88|1|CA|G|799
5J88|1|CA|A|800
5J88|1|CA|G|801
5J88|1|CA|A|802
5J88|1|CA|U|803
5J88|1|CA|A|804
5J88|1|CA|G|805
5J88|1|CA|C|806

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CM

50S ribosomal protein L15