IL_5J88_190
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 5J88|1|CA|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_190 not in the Motif Atlas
- Geometric match to IL_4WF9_065
- Geometric discrepancy: 0.1153
- The information below is about IL_4WF9_065
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
5J88|1|CA|A|1669
5J88|1|CA|C|1670
5J88|1|CA|U|1671
5J88|1|CA|A|1672
5J88|1|CA|G|1673
5J88|1|CA|G|1674
*
5J88|1|CA|C|1990
5J88|1|CA|U|1991
5J88|1|CA|G|1992
5J88|1|CA|U|1993
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CD
- 50S ribosomal protein L3
- Chain CL
- 50S ribosomal protein L14
Coloring options: