IL_5J88_222

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5J88|1|CA|G|2576, 5J88|1|CA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_222 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1753

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5J88|1|CA|C|2510
5J88|1|CA|U|2511
5J88|1|CA|C|2512
*
5J88|1|CA|G|2574
5J88|1|CA|C|2575
5J88|1|CA|G|2576
5J88|1|CA|A|2577
5J88|1|CA|G|2578

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3