IL_5J88_228
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_228 not in the Motif Atlas
- Homologous match to IL_5J7L_346
- Geometric discrepancy: 0.0718
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J88|1|CA|C|2652
5J88|1|CA|U|2653
5J88|1|CA|A|2654
5J88|1|CA|G|2655
5J88|1|CA|U|2656
5J88|1|CA|A|2657
5J88|1|CA|C|2658
*
5J88|1|CA|G|2663
5J88|1|CA|G|2664
5J88|1|CA|A|2665
5J88|1|CA|C|2666
5J88|1|CA|C|2667
5J88|1|CA|G|2668
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain CG
- 50S ribosomal protein L6
Coloring options: