IL_5J88_264

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UC*GUUA

Length

6 nucleotides

Bulged bases

5J88|1|DA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_264 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.0685

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5J88|1|DA|U|847||A
5J88|1|DA|C|848
*
5J88|1|DA|G|930
5J88|1|DA|U|931
5J88|1|DA|U|932
5J88|1|DA|A|933

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L30