IL_5J88_288

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_288 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0641

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5J88|1|DA|C|1319
5J88|1|DA|C|1320
5J88|1|DA|A|1321
5J88|1|DA|A|1322
5J88|1|DA|C|1323
*
5J88|1|DA|G|1331
5J88|1|DA|G|1332
5J88|1|DA|G|1333

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L22

Chain DU

50S ribosomal protein L23