IL_5J88_294

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5J88|1|DA|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_294 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0611

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J88|1|DA|C|1437
5J88|1|DA|U|1438
5J88|1|DA|A|1439
5J88|1|DA|U|1440
*
5J88|1|DA|A|1551
5J88|1|DA|A|1552
5J88|1|DA|A|1553
5J88|1|DA|U|1554
5J88|1|DA|G|1555

Current chains

Chain DA

23S rRNA

Nearby chains