IL_5J88_339

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAAC*G(PSU)(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_339 not in the Motif Atlas

Homologous match to IL_5J7L_343

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_343

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|DA|G|2588
5J88|1|DA|A|2589
5J88|1|DA|A|2590
5J88|1|DA|C|2591
*
5J88|1|DA|G|2603
5J88|1|DA|PSU|2604
5J88|1|DA|PSU|2605
5J88|1|DA|C|2606

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2