IL_5J88_372

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5J88|1|CA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J88_372 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1412

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5J88|1|CA|C|1043
5J88|1|CA|C|1044
5J88|1|CA|C|1045
5J88|1|CA|A|1046
5J88|1|CA|G|1047
5J88|1|CA|A|1048
5J88|1|CA|C|1049
5J88|1|CA|A|1050
5J88|1|CA|G|1051
*
5J88|1|CA|U|1108
5J88|1|CA|C|1109
5J88|1|CA|G|1110
5J88|1|CA|A|1111
5J88|1|CA|G|1112

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6