IL_5J88_388
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J88_388 not in the Motif Atlas
- Homologous match to IL_5J7L_386
- Geometric discrepancy: 0.054
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
5J88|1|DA|G|1666
5J88|1|DA|G|1667
5J88|1|DA|A|1668
5J88|1|DA|A|1669
5J88|1|DA|C|1670
5J88|1|DA|U|1671
5J88|1|DA|A|1672
5J88|1|DA|G|1673
5J88|1|DA|G|1674
*
5J88|1|DA|C|1990
5J88|1|DA|U|1991
5J88|1|DA|G|1992
5J88|1|DA|U|1993
5J88|1|DA|C|1994
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DD
- 50S ribosomal protein L3
- Chain DL
- 50S ribosomal protein L14
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