IL_5J8A_012

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5J8A|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0203

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5J8A|1|AA|G|147
5J8A|1|AA|G|148
5J8A|1|AA|A|149
5J8A|1|AA|U|150
5J8A|1|AA|A|151
5J8A|1|AA|A|152
5J8A|1|AA|C|153
*
5J8A|1|AA|G|168
5J8A|1|AA|C|169
5J8A|1|AA|U|170
5J8A|1|AA|A|171
5J8A|1|AA|A|172
5J8A|1|AA|U|173
5J8A|1|AA|A|174
5J8A|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20