IL_5J8A_023

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0185

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|AA|G|450
5J8A|1|AA|A|451
5J8A|1|AA|A|452
5J8A|1|AA|G|453
5J8A|1|AA|G|454
5J8A|1|AA|G|455
*
5J8A|1|AA|C|477
5J8A|1|AA|A|478
5J8A|1|AA|U|479
5J8A|1|AA|U|480
5J8A|1|AA|G|481
5J8A|1|AA|A|482
5J8A|1|AA|C|483

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16