IL_5J8A_059

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_059 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0937

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J8A|1|AA|G|1401
5J8A|1|AA|4OC|1402
5J8A|1|AA|C|1403
5J8A|1|AA|C|1404
*
5J8A|1|AA|G|1497
5J8A|1|AA|UR3|1498
5J8A|1|AA|A|1499
5J8A|1|AA|A|1500
5J8A|1|AA|C|1501

Current chains

Chain AA

16S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA