IL_5J8A_079
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 5J8A|1|BA|U|244, 5J8A|1|BA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8A_079 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.0496
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J8A|1|BA|G|242
5J8A|1|BA|A|243
5J8A|1|BA|U|244
5J8A|1|BA|U|245
5J8A|1|BA|A|246
5J8A|1|BA|G|247
*
5J8A|1|BA|C|277
5J8A|1|BA|G|278
5J8A|1|BA|A|279
5J8A|1|BA|C|280
5J8A|1|BA|G|281
5J8A|1|BA|A|282
5J8A|1|BA|U|283
5J8A|1|BA|C|284
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BL
- 30S ribosomal protein S12
- Chain BQ
- 30S ribosomal protein S17
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