IL_5J8A_098
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 5J8A|1|BA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8A_098 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0265
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5J8A|1|BA|U|662
5J8A|1|BA|A|663
5J8A|1|BA|G|664
5J8A|1|BA|A|665
5J8A|1|BA|G|666
*
5J8A|1|BA|U|740
5J8A|1|BA|G|741
5J8A|1|BA|G|742
5J8A|1|BA|A|743
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BF
- 30S ribosomal protein S6
- Chain BO
- 30S ribosomal protein S15
- Chain BR
- 30S ribosomal protein S18
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