IL_5J8A_177

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_177 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0606

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J8A|1|CA|C|1351
5J8A|1|CA|U|1352
5J8A|1|CA|A|1353
5J8A|1|CA|A|1354
5J8A|1|CA|G|1355
*
5J8A|1|CA|C|1376
5J8A|1|CA|G|1377
5J8A|1|CA|A|1378
5J8A|1|CA|U|1379
5J8A|1|CA|G|1380

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2