IL_5J8A_265
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5J8A|1|DA|G|776, 5J8A|1|DA|A|788, 5J8A|1|DA|A|789, 5J8A|1|DA|U|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8A_265 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.0514
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5J8A|1|DA|G|775
5J8A|1|DA|G|776
5J8A|1|DA|G|777
*
5J8A|1|DA|C|787
5J8A|1|DA|A|788
5J8A|1|DA|A|789
5J8A|1|DA|U|790
5J8A|1|DA|C|791
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D3
- 50S ribosomal protein L34
- Chain DC
- 50S ribosomal protein L2
- Chain DE
- 50S ribosomal protein L4
- Chain DT
- 50S ribosomal protein L22
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