IL_5J8A_269
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8A_269 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0276
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8A|1|DA|G|856
5J8A|1|DA|G|857
5J8A|1|DA|G|858
5J8A|1|DA|G|859
5J8A|1|DA|U|860
5J8A|1|DA|A|861
5J8A|1|DA|G|862
*
5J8A|1|DA|C|915
5J8A|1|DA|G|916
5J8A|1|DA|A|917
5J8A|1|DA|A|918
5J8A|1|DA|U|919
5J8A|1|DA|A|920
5J8A|1|DA|C|921
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L30
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DN
- 50S ribosomal protein L16
- Chain DX
- 50S ribosomal protein L27
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