IL_5J8A_341

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5J8A|1|DA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_341 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.0323

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5J8A|1|DA|U|2522
5J8A|1|DA|G|2523
*
5J8A|1|DA|C|2540
5J8A|1|DA|A|2541
5J8A|1|DA|A|2542
5J8A|1|DA|G|2543

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DK

50S ribosomal protein L13