IL_5J8A_379

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5J8A|1|CA|U|2111, 5J8A|1|CA|A|2114, 5J8A|1|CA|G|2115, 5J8A|1|CA|U|2118, 5J8A|1|CA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_379 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4982

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5J8A|1|CA|G|2110
5J8A|1|CA|U|2111
5J8A|1|CA|G|2112
5J8A|1|CA|U|2113
5J8A|1|CA|A|2114
5J8A|1|CA|G|2115
5J8A|1|CA|G|2116
5J8A|1|CA|A|2117
5J8A|1|CA|U|2118
5J8A|1|CA|A|2119
5J8A|1|CA|G|2120
*
5J8A|1|CA|C|2178
5J8A|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains