IL_5J8A_388

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_388 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0188

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|DA|U|1851
5J8A|1|DA|U|1852
5J8A|1|DA|A|1853
5J8A|1|DA|A|1854
5J8A|1|DA|U|1855
5J8A|1|DA|U|1856
5J8A|1|DA|G|1857
5J8A|1|DA|A|1858
5J8A|1|DA|U|1859
5J8A|1|DA|G|1860
*
5J8A|1|DA|U|1882
5J8A|1|DA|U|1883
5J8A|1|DA|G|1884
5J8A|1|DA|A|1885
5J8A|1|DA|U|1886
5J8A|1|DA|C|1887
5J8A|1|DA|G|1888
5J8A|1|DA|A|1889
5J8A|1|DA|A|1890
5J8A|1|DA|G|1891

Current chains

Chain DA

23S rRNA

Nearby chains