IL_5J8B_007
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_007 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.0422
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5J8B|1|A|G|176
5J8B|1|A|G|177
5J8B|1|A|A|178
5J8B|1|A|A|179
5J8B|1|A|C|180
5J8B|1|A|U|181
5J8B|1|A|G|182
*
5J8B|1|A|C|189
5J8B|1|A|U|190
5J8B|1|A|C|191
5J8B|1|A|A|192
5J8B|1|A|G|193
5J8B|1|A|U|194
5J8B|1|A|A|195
5J8B|1|A|C|196
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain 7
- 50S ribosomal protein L34
- Chain 8
- 50S ribosomal protein L35
- Chain P
- 50S ribosomal protein L15
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