IL_5J8B_008

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_008 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0436

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5J8B|1|A|U|227
5J8B|1|A|G|228
5J8B|1|A|A|229
5J8B|1|A|G|230
5J8B|1|A|U|231
5J8B|1|A|A|232
5J8B|1|A|G|233
*
5J8B|1|A|C|241
5J8B|1|A|G|242
5J8B|1|A|A|243
5J8B|1|A|A|244
5J8B|1|A|A|245
5J8B|1|A|G|246

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain P

50S ribosomal protein L15