IL_5J8B_024
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 5J8B|1|A|G|822, 5J8B|1|A|A|834, 5J8B|1|A|A|835, 5J8B|1|A|C|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_024 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.0464
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8B|1|A|G|821
5J8B|1|A|G|822
5J8B|1|A|A|823
*
5J8B|1|A|U|833
5J8B|1|A|A|834
5J8B|1|A|A|835
5J8B|1|A|C|836
5J8B|1|A|C|837
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L2
- Chain F
- 50S ribosomal protein L4
- Chain W
- 50S ribosomal protein L22
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