IL_5J8B_026

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5J8B|1|A|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_026 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.1572

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5J8B|1|A|C|890
5J8B|1|A|G|891
5J8B|1|A|C|892
*
5J8B|1|A|G|975
5J8B|1|A|G|976
5J8B|1|A|A|977
5J8B|1|A|G|978

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L30