IL_5J8B_038

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5J8B|1|A|U|1186, 5J8B|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_038 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0839

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5J8B|1|A|C|1063
5J8B|1|A|U|1064
5J8B|1|A|A|1065
5J8B|1|A|A|1066
5J8B|1|A|G|1067
5J8B|1|A|U|1068
5J8B|1|A|G|1069
*
5J8B|1|A|C|1184
5J8B|1|A|U|1185
5J8B|1|A|U|1186
5J8B|1|A|A|1187
5J8B|1|A|A|1188
5J8B|1|A|G|1189

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain N

50S ribosomal protein L13