IL_5J8B_076
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5J8B|1|A|A|1959, 5J8B|1|A|U|1965
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_076 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1492
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5J8B|1|A|C|1955
5J8B|1|A|G|1956
5J8B|1|A|A|1957
5J8B|1|A|A|1958
5J8B|1|A|A|1959
5J8B|1|A|U|1960
5J8B|1|A|U|1961
5J8B|1|A|C|1962
5J8B|1|A|C|1963
5J8B|1|A|U|1964
5J8B|1|A|U|1965
5J8B|1|A|G|1966
*
5J8B|1|A|C|1982
5J8B|1|A|C|1983
5J8B|1|A|U|1984
5J8B|1|A|G|1985
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain w
- Transfer RNA; tRNA
- Chain z
- GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4
Coloring options: