IL_5J8B_078

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5J8B|1|A|C|2076, 5J8B|1|A|C|2623, 5J8B|1|A|U|2624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_078 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0617

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J8B|1|A|A|2075
5J8B|1|A|C|2076
5J8B|1|A|G|2077
5J8B|1|A|A|2078
*
5J8B|1|A|U|2622
5J8B|1|A|C|2623
5J8B|1|A|U|2624
5J8B|1|A|A|2625
5J8B|1|A|U|2626

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain E

50S ribosomal protein L3

Chain W

50S ribosomal protein L22