3D structure

PDB id
5J8B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUGUGAACCCC*GGGGGGAG
Length
19 nucleotides
Bulged bases
5J8B|1|A|G|2152, 5J8B|1|A|U|2153, 5J8B|1|A|G|2154, 5J8B|1|A|G|2178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5J8B|1|A|C|2150
5J8B|1|A|U|2151
5J8B|1|A|G|2152
5J8B|1|A|U|2153
5J8B|1|A|G|2154
5J8B|1|A|A|2155
5J8B|1|A|A|2156
5J8B|1|A|C|2157
5J8B|1|A|C|2158
5J8B|1|A|C|2159
5J8B|1|A|C|2160
*
5J8B|1|A|G|2173
5J8B|1|A|G|2174
5J8B|1|A|G|2175
5J8B|1|A|G|2176
5J8B|1|A|G|2177
5J8B|1|A|G|2178
5J8B|1|A|A|2179
5J8B|1|A|G|2180

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L1

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4302 s
Application loaded.