IL_5J8B_093
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 5J8B|1|A|U|2502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_093 not in the Motif Atlas
- Homologous match to IL_7RQB_094
- Geometric discrepancy: 0.0663
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
5J8B|1|A|A|2470
5J8B|1|A|U|2471
5J8B|1|A|C|2472
*
5J8B|1|A|G|2500
5J8B|1|A|G|2501
5J8B|1|A|U|2502
5J8B|1|A|U|2503
5J8B|1|A|U|2504
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L16
- Chain w
- Transfer RNA; tRNA
- Chain z
- GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4
Coloring options: