IL_5J8B_097

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5J8B|1|A|A|2583, 5J8B|1|A|C|2584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_097 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0711

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5J8B|1|A|C|2523
5J8B|1|A|G|2524
*
5J8B|1|A|C|2582
5J8B|1|A|A|2583
5J8B|1|A|C|2584
5J8B|1|A|G|2585

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L13

Chain z

GDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4