IL_5J8B_135

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5J8B|1|a|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_135 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5J8B|1|a|C|553
5J8B|1|a|G|554
5J8B|1|a|U|555
5J8B|1|a|A|556
5J8B|1|a|A|557
5J8B|1|a|A|558
5J8B|1|a|G|559
*
5J8B|1|a|C|858
5J8B|1|a|G|859

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17