IL_5J8B_167
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_167 not in the Motif Atlas
- Geometric match to IL_5MWI_004
- Geometric discrepancy: 0.1247
- The information below is about IL_5MWI_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5J8B|1|a|G|1388
5J8B|1|a|U|1389
5J8B|1|a|C|1390
*
5J8B|1|a|G|1472
5J8B|1|a|U|1473
5J8B|1|a|C|1474
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain v
- mRNA
- Chain w
- Transfer RNA; tRNA
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