3D structure

PDB id
5J8B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGAAG*CGAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J8B_171 not in the Motif Atlas
Homologous match to IL_4LFB_062
Geometric discrepancy: 0.1054
The information below is about IL_4LFB_062
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_77691.5
Basepair signature
cWW-tSH-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

5J8B|1|a|C|1414
5J8B|1|a|G|1415
5J8B|1|a|A|1416
5J8B|1|a|A|1417
5J8B|1|a|G|1418
*
5J8B|1|a|C|1444
5J8B|1|a|G|1445
5J8B|1|a|A|1446
5J8B|1|a|G|1447

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain T
50S ribosomal protein L19
Chain t
30S ribosomal protein S20

Coloring options:


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