IL_5J8B_171
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*CGAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_171 not in the Motif Atlas
- Homologous match to IL_4LFB_062
- Geometric discrepancy: 0.1054
- The information below is about IL_4LFB_062
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_77691.5
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8B|1|a|C|1414
5J8B|1|a|G|1415
5J8B|1|a|A|1416
5J8B|1|a|A|1417
5J8B|1|a|G|1418
*
5J8B|1|a|C|1444
5J8B|1|a|G|1445
5J8B|1|a|A|1446
5J8B|1|a|G|1447
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain T
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S20
Coloring options: