IL_5J8B_174

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_174 not in the Motif Atlas

Homologous match to IL_4WF9_034

Geometric discrepancy: 0.1445

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5J8B|1|A|A|916
5J8B|1|A|U|917
5J8B|1|A|A|918
*
5J8B|1|A|U|950
5J8B|1|A|G|951
5J8B|1|A|U|952

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L16

Chain Z

50S ribosomal protein L25