IL_5J8B_176

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGGC*GCCUAC

Length

11 nucleotides

Bulged bases

5J8B|1|A|A|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|A|G|926
5J8B|1|A|G|927
5J8B|1|A|G|928
5J8B|1|A|G|929
5J8B|1|A|C|930
*
5J8B|1|A|G|937
5J8B|1|A|C|938
5J8B|1|A|C|939
5J8B|1|A|U|940
5J8B|1|A|A|941
5J8B|1|A|C|942

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain w

Transfer RNA; tRNA