IL_5J8B_178

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUCGCGC*GCGCGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8B|1|A|G|2122
5J8B|1|A|U|2123
5J8B|1|A|C|2124
5J8B|1|A|G|2125
5J8B|1|A|C|2126
5J8B|1|A|G|2127
5J8B|1|A|C|2128
*
5J8B|1|A|G|2203
5J8B|1|A|C|2204
5J8B|1|A|G|2205
5J8B|1|A|C|2206
5J8B|1|A|G|2207
5J8B|1|A|G|2208
5J8B|1|A|C|2209

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L1