IL_5J8B_180

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_180 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0553

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5J8B|1|a|G|657
5J8B|1|a|G|658
5J8B|1|a|A|659
5J8B|1|a|A|660
5J8B|1|a|U|661
*
5J8B|1|a|G|697
5J8B|1|a|G|698
5J8B|1|a|A|699
5J8B|1|a|A|700
5J8B|1|a|C|701

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain f

30S ribosomal protein S6

Chain k

30S ribosomal protein S11

Chain r

30S ribosomal protein S18