IL_5J8B_182

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

5J8B|1|A|A|941

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_182 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.3315

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5J8B|1|A|G|926
5J8B|1|A|G|927
5J8B|1|A|G|928
*
5J8B|1|A|C|939
5J8B|1|A|U|940
5J8B|1|A|A|941
5J8B|1|A|C|942

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA